PASCAL - Pattern Analysis, Statistical Modelling and Computational Learning

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PASCAL Network

Full NameAntti Honkela
TitleSenior Researcher
SiteUniversity of Helsinki
StatusResearcher
Tel
Fax
WWWwww.hiit.fi/u/ahonkela/

Research Interests
Computational, Information-Theoretic Learning with Statistics
Learning/Statistics & Optimisation
Theory & Algorithms
Publications

Number of records: 39.

A Gradient-Based Algorithm Competitive with Variational Bayesian EM for Mixture of Gaussians Mikael Kuusela, Tapani Raiko, Antti Honkela and Juha Karhunen Conference or Workshop Item Item availablity restricted. (June 2009)
Advances in Variational Bayesian Nonlinear Blind Source Separation Antti Honkela Thesis (April 2005)
Agglomerative Independent Variable Group Analysis Antti Honkela, Jeremias Seppä and Esa Alhoniemi Conference or Workshop Item (2007)
Agglomerative independent variable group analysis Antti Honkela, Jeremias Seppä and Esa Alhoniemi Article Item availablity restricted. (March 2008)
Approximate Riemannian conjugate gradient learning for fixed-form variational Bayes Antti Honkela, Tapani Raiko, Mikael Kuusela, Matti Tornio and Juha Karhunen Article (November 2010)
Bayes Blocks: A Python Toolbox for Variational Bayesian Learning Antti Honkela, Markus Harva, Tapani Raiko, Harri Valpola and Juha Karhunen Conference or Workshop Item (09 December 2006)
Bayes Blocks: A Python Toolbox for Variational Bayesian Learning Antti Honkela, Markus Harva, Tapani Raiko, Harri Valpola and Juha Karhunen Conference or Workshop Item (2006)
Bayes Blocks: An Implementation of the Variational Bayesian Building Blocks Framework Markus Harva, Tapani Raiko, Antti Honkela, Harri Valpola and Juha Karhunen Conference or Workshop Item (July 2005)
Bayes Blocks: An Implementation of the Variational Bayesian Building Blocks Framework Markus Harva, Tapani Raiko, Antti Honkela, Harri Valpola and Juha Karhunen Conference or Workshop Item Item availablity restricted. (26 July 2005)
Bayesian model of transcript differential expression in RNA-seq data with biological variation Peter Glaus, Antti Honkela and Magnus Rattray Conference or Workshop Item Item availablity restricted. (17 December 2011)
Blind Separation of Nonlinear Mixtures by Variational Bayesian Learning Antti Honkela, Harri Valpola, Alexander Ilin and Juha Karhunen Article Item availablity restricted. (2007)
Compact Modeling of Data Using Independent Variable Group Analysis Esa Alhoniemi, Antti Honkela, Krista Lagus, Jeremias Seppä, Paul Wagner and Harri Valpola Article Item availablity restricted. (2007)
Empirical evidence of the linear nature of magnetoencephalograms Antti Honkela, Tomas Östman and Ricardo Vigário Conference or Workshop Item (April 2005)
Exploring the independence of gene regulatory modules Janne Nikkilä, Antti Honkela and Samuel Kaski Conference or Workshop Item (June 2006)
Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities Pei Gao, Antti Honkela, Magnus Rattray and Neil Lawrence Article Item availablity restricted. (15 August 2008)
Hierarchical Gaussian Process Models of Gene Expression and Transcriptional Regulation Antti Honkela, James Hensman, Neil Lawrence and Magnus Rattray Conference or Workshop Item Item not available online. (April 2011)
Identifying differentially expressed transcripts from RNA-seq data with biological variation Peter Glaus, Antti Honkela and Magnus Rattray Article Item availablity restricted. (2012)
Identifying targets of transcriptionally regulated transcription factors using dynamical models Antti Honkela, Neil Lawrence and Magnus Rattray Conference or Workshop Item Item not available online. (02 April 2009)
Identifying targets of transcriptionally regulated transcription factors using dynamical models Antti Honkela, Neil Lawrence and Magnus Rattray Conference or Workshop Item Item availablity restricted. (27 June 2009)
Independent Variable Group Analysis in Learning Compact Representations for Data Krista Lagus, Esa Alhoniemi, Jeremias Seppä, Antti Honkela and Paul Wagner Conference or Workshop Item (15 June 2005)
Independent variable group analysis in learning compact representations for data Krista Lagus, Esa Alhoniemi, Jeremias Seppä, Antti Honkela and Paul Wagner Conference or Workshop Item (June 2005)
Macadamia: Master's programme in machine learning and data mining Tapani Raiko, Kai Puolamäki, Juha Karhunen, Jaakko Hollmen, Antti Honkela, Heikki Mannila, Erkki Oja and Olli Simula Article (2008)
Mining Regulatory Network Connections by Ranking Transcription Factor Target Genes Using Time Series Expression Data Antti Honkela, Magnus Rattray and Neil Lawrence Book Section Item not available online. (2013)
Missing-Feature Reconstruction With a Bounded Nonlinear State-Space Model Ulpu Remes, Kalle Palomäki, Tapani Raiko, Antti Honkela and Mikko Kurimo Article Item not available online. (October 2011)
Model-based method for transcription factor target identification with limited data Antti Honkela, Charles Girardot, E. Hilary Gustafson, Ya-Hsin Liu, Eileen E. M. Furlong, Neil Lawrence and Magnus Rattray Article (27 April 2010)
Natural Conjugate Gradient in Variational Inference Antti Honkela, Matti Tornio, Tapani Raiko and Juha Karhunen Conference or Workshop Item (2008)
Natural Conjugate Gradient in Variational Inference Antti Honkela, Matti Tornio, Tapani Raiko and Juha Karhunen Conference or Workshop Item Item availablity restricted. (29 June 2008)
Proceedings of the 2010 IEEE International Workshop on Machine Learning for Signal Processing (MLSP 2010) Book Item not available online. (2010)
Ranking of Gene Regulators through Differential Equations and Gaussian Processes Antti Honkela, Marta Milo, Matthew Holley, Magnus Rattray and Neil Lawrence Conference or Workshop Item Item availablity restricted. (2010)
State Inference in Variational Bayesian Nonlinear State-Space Models Tapani Raiko, Matti Tornio, Antti Honkela and Juha Karhunen Conference or Workshop Item (05 March 2006)
State Inference in Variational Bayesian Nonlinear State-Space Models Tapani Raiko, Matti Tornio, Antti Honkela and Juha Karhunen Conference or Workshop Item Item availablity restricted. (2006)
tigre: Transcription factor Inference through Gaussian process Reconstruction of Expression for Bioconductor Antti Honkela, Pei Gao, Jonatan Ropponen, Magnus Rattray and Neil Lawrence Article Item not available online. (01 April 2011)
Time Series Prediction with Variational Bayesian Nonlinear State-Space Models Matti Tornio, Antti Honkela and Juha Karhunen Conference or Workshop Item (2007)
Unsupervised variational Bayesian learning of nonlinear models Antti Honkela and Harri Valpola Conference or Workshop Item (2005)
Using Kernel PCA for Initialisation of Variational Bayesian Nonlinear Blind Source Separation Method Antti Honkela, Stefan Harmeling, Leo Lundqvist and Harri Valpola Conference or Workshop Item Item availablity restricted. (September 2004)
Variational Bayes for Continuous-Time Nonlinear State-Space Models Antti Honkela, Matti Tornio and Tapani Raiko Conference or Workshop Item (09 December 2006)
Variational Bayes for Continuous-Time Nonlinear State-Space Models Antti Honkela, Matti Tornio and Tapani Raiko Conference or Workshop Item (2006)
Variational inference and learning for continuous-time nonlinear state-space models Antti Honkela, Markus Harva, Tapani Raiko and Juha Karhunen Conference or Workshop Item (27 May 2008)
Variational Inference and Learning for Non-Linear State-Space Models with State-Dependent Observation Noise Veli Peltola and Antti Honkela Conference or Workshop Item Item availablity restricted. (2010)

This list was generated on Tue May 21 08:32:44 BST 2013.